NASCArrays Information at The BAR

Welcome to NASCArrays information at the BAR. This page hosts meta-information from the NASCArrays service (2002-2013). This information was parsed from text files available on the NASCArrays site. NASCArrays data is on iPlant server. To download experiment data from iPlant, please click on the experiment number. To download the CEL files, please click on the ftp link. Searched SlideID is highlighted in the table below.

Experiment:152
Title:AtGenExpress:Developmental series (flowers and pollen)
Date:2004-07-09
Description:AtGenExpress: A multinational coordinated effort to uncover the transcriptome of the multicellular model organism Arabidopsis thaliana.The activity of genes and their encoded products can be regulated in several ways, but transcription is the primary level, since all other modes of regulation (RNA splicing, RNA and protein stability, etc.) are dependent on a gene being transcribed in the first place. The importance of transcriptional regulation has been underscored by the recent flood of global expression analyses, which have confirmed that transcriptional co-regulation of genes that act together is the norm, not the exception. Moreover, many studies suggest that evolutionary change is driven in large part by modifications of transcriptional programs. An essential first step toward deciphering the transcriptional code is to determine the expression pattern of all genes. With this goal in mind, an international effort to develop a gene expression atlas of Arabidopsis has been underway since fall 2003. This project, dubbed AtGenExpress, is funded by the DFG, and will provide the Arabidopsis community with access to a large set of Affymetrix microarray data. As part of this collaboration, we have generated expression data from 80 biologicaly different samples in triplicate. The focus of this data set is on different tissues and different developmental stages in wild type Columbia (Col-0) and various mutants.
ftp Link:ftp Link

Slide Information:
Slide IDSlide NameGenetic BackgroundTissueStock CodeCel File
ATGE_31_A21201flowers stage 9 ATGE_31_A2.CEL
ATGE_31_B21202flowers stage 9 ATGE_31_B2.CEL
ATGE_31_C21203flowers stage 9 ATGE_31_C2.CEL
ATGE_32_A21204flowers stage 10/11 ATGE_32_A2.CEL
ATGE_32_B21205flowers stage 10/11 ATGE_32_B2.CEL
ATGE_32_C21206flowers stage 10/11 ATGE_32_C2.CEL
ATGE_33_A1207flowers stage 12 ATGE_33_A.CEL
ATGE_33_B1208flowers stage 12 ATGE_33_B.CEL
ATGE_33_C1209flowers stage 12 ATGE_33_C.CEL
ATGE_34_A1210flowers stage 12, sepals ATGE_34_A.CEL
ATGE_34_B1211flowers stage 12, sepals ATGE_34_B.CEL
ATGE_34_C1212flowers stage 12, sepals ATGE_34_C.CEL
ATGE_35_A1213flowers stage 12, petals ATGE_35_A.CEL
ATGE_35_B1214flowers stage 12, petals ATGE_35_B.CEL
ATGE_35_C1215flowers stage 12, petals ATGE_35_C.CEL
ATGE_36_A1216flowers stage 12, stamens ATGE_36_A.CEL
ATGE_36_B1217flowers stage 12, stamens ATGE_36_B.CEL
ATGE_36_C1218flowers stage 12, stamens ATGE_36_C.CEL
ATGE_37_A1219flowers stage 12, carpels ATGE_37_A.CEL
ATGE_37_B1220flowers stage 12, carpels ATGE_37_B.CEL
ATGE_37_C1221flowers stage 12, carpels ATGE_37_C.CEL
ATGE_39_A1222flowers stage 15 ATGE_39_A.CEL
ATGE_39_B1223flowers stage 15 ATGE_39_B.CEL
ATGE_39_C1224flowers stage 15 ATGE_39_C.CEL
ATGE_40_A1225flowers stage 15, pedicels ATGE_40_A.CEL
ATGE_40_B1226flowers stage 15, pedicels ATGE_40_B.CEL
ATGE_40_C1227flowers stage 15, pedicels ATGE_40_C.CEL
ATGE_41_A1228flowers stage 15, sepals ATGE_41_A.CEL
ATGE_41_B1229flowers stage 15, sepals ATGE_41_B.CEL
ATGE_41_C1230flowers stage 15, sepals ATGE_41_C.CEL
ATGE_42_B1231flowers stage 15, petals ATGE_42_B.CEL
ATGE_42_C1232flowers stage 15, petals ATGE_42_C.CEL
ATGE_42_D1233flowers stage 15, petals ATGE_42_D.CEL
ATGE_43_A1234flowers stage 15, stamen ATGE_43_A.CEL
ATGE_43_B1235flowers stage 15, stamen ATGE_43_B.CEL
ATGE_43_C1236flowers stage 15, stamen ATGE_43_C.CEL
ATGE_45_A1237flowers stage 15, carpels ATGE_45_A.CEL
ATGE_45_B1238flowers stage 15, carpels ATGE_45_B.CEL
ATGE_45_C1239flowers stage 15, carpels ATGE_45_C.CEL
ATGE_53_A1261Col-0flower stage 12 equivalent; multi-carpel gyneoceum; enlarged meristem; increased organ number ATGE_53_A.CEL
ATGE_53_B1262Col-0flower stage 12 equivalent; multi-carpel gyneoceum; enlarged meristem; increased organ number ATGE_53_B.CEL
ATGE_53_C1263Col-0flower stage 12 equivalent; multi-carpel gyneoceum; enlarged meristem; increased organ number ATGE_53_C.CEL
ATGE_54_A1264Col-0flower stage 12 equivalent; flowers converted to leaf-like structures; some shoot characteristics ATGE_54_A.CEL
ATGE_54_B1265Col-0flower stage 12 equivalent; flowers converted to leaf-like structures; some shoot characteristics ATGE_54_B.CEL
ATGE_54_C1266Col-0flower stage 12 equivalent; flowers converted to leaf-like structures; some shoot characteristics ATGE_54_C.CEL
ATGE_55_A1267Col-0flower stage 12 equivalent; flowers without sepals, petals replaced by sec. flowers ATGE_55_A.CEL
ATGE_55_B1268Col-0flower stage 12 equivalent; flowers without sepals, petals replaced by sec. flowers ATGE_55_B.CEL
ATGE_55_C1269Col-0flower stage 12 equivalent; flowers without sepals, petals replaced by sec. flowers ATGE_55_C.CEL
ATGE_56_A1270Col-0flower stage 12 equivalent; flowers without sepals, petals; carpeloid structures on sepals ATGE_56_A.CEL
ATGE_56_B1271Col-0flower stage 12 equivalent; flowers without sepals, petals; carpeloid structures on sepals ATGE_56_B.CEL
ATGE_56_C1272Col-0flower stage 12 equivalent; flowers without sepals, petals; carpeloid structures on sepals ATGE_56_C.CEL
ATGE_57_A1273Col-0flower stage 12 equivalent; flowers without petals, stamens ATGE_57_A.CEL
ATGE_57_B1274Col-0flower stage 12 equivalent; flowers without petals, stamens ATGE_57_B.CEL
ATGE_57_C1275Col-0flower stage 12 equivalent; flowers without petals, stamens ATGE_57_C.CEL
ATGE_58_A1276Col-0flower stage 12 equivalent; flowers without stamens, carpels; replaced by sepals and petals; indeterminate ATGE_58_A.CEL
ATGE_58_B1277Col-0flower stage 12 equivalent; flowers without stamens, carpels; replaced by sepals and petals; indeterminate ATGE_58_B.CEL
ATGE_58_C1278Col-0flower stage 12 equivalent; flowers without stamens, carpels; replaced by sepals and petals; indeterminate ATGE_58_C.CEL
ATGE_59_A1279Col-0flower stage 12 equivalent; filamentous organs in whorls two and three ATGE_59_A.CEL
ATGE_59_B1280Col-0flower stage 12 equivalent; filamentous organs in whorls two and three ATGE_59_B.CEL
ATGE_59_C1281Col-0flower stage 12 equivalent; filamentous organs in whorls two and three ATGE_59_C.CEL
ATGE_73_A1282mature pollen ATGE_73_A.CEL
ATGE_73_B1283mature pollen ATGE_73_B.CEL
ATGE_73_C1284mature pollen ATGE_73_C.CEL
ATGE_92_A1321flower ATGE_92_A.CEL
ATGE_92_B1322flower ATGE_92_B.CEL
ATGE_92_C1323flower ATGE_92_C.CEL